Software
We create and distribute software and IT tools for the computational biology research community
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Metaphor
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NanoSplicer
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BLAZE
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KIR*IMP
The KIR*IMP method will allow you to impute various KIR types using your data, including KIR gene copy number, KIR A or B haplotype and gene-content haplotypes.
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LDAK
Fast computation of LD-Adjusted SNP weights and Kinship matrices for genome-wide mixed-model analysis. Includes a generalised REML Solver and efficient gene-based association testing.
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likeLTD
likeLTD is an R package for computing likelihoods for DNA profile evidence, including complex mixtures and when profiles are subject to dropout.
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mixOmics
mixOmics is an R toolkit for the multivariate analysis of biological data, with a specific focus on ‘omics data integration and variable selection.
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multiBLUP
The best genomic predictor we can find, for individual genotype data and both binary and quantitative traits. Generalises the classical BLUP approach and largely retains its computational efficiency.
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mvBIMBAM
BIMBAM for genetic association analysis of multiple related phenotypes.
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WaveQTL
Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays.
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MTR-Viewer
The Missense Tolerance Ratio measures the purifying selection acting on missense variants. Interactive plots and downloads available for 18,000+ genes.
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rater
'rater' is an R package for fitting and interrogating statistical models of repeated categorical rating data.